IL_8B6C_074
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 8B6C|1|5|U|1869, 8B6C|1|5|C|1870, 8B6C|1|5|G|1994, 8B6C|1|5|A|1996
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_074 not in the Motif Atlas
- Geometric match to IL_5TBW_051
- Geometric discrepancy: 0.1442
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8B6C|1|5|C|1865
8B6C|1|5|U|1866
8B6C|1|5|C|1867
8B6C|1|5|A|1868
8B6C|1|5|U|1869
8B6C|1|5|C|1870
8B6C|1|5|A|1871
8B6C|1|5|G|1872
*
8B6C|1|5|C|1992
8B6C|1|5|U|1993
8B6C|1|5|G|1994
8B6C|1|5|G|1995
8B6C|1|5|A|1996
8B6C|1|5|G|1997
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- 60S ribosomal protein L13a
- Chain S
- 60S ribosomal protein L18a
- Chain m
- 60S ribosomal protein L40
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