IL_8B6C_185
3D structure
- PDB id
- 8B6C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61 in complex with cyclotriazadisulfonamide derivative CK147
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.79 Å
Loop
- Sequence
- GUAGUA(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B6C_185 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.0759
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8B6C|1|5|G|2201
8B6C|1|5|U|2202
8B6C|1|5|A|2203
8B6C|1|5|G|2204
8B6C|1|5|U|2205
8B6C|1|5|A|2206
8B6C|1|5|OMG|2207
*
8B6C|1|5|C|3590
8B6C|1|5|G|3591
8B6C|1|5|A|3592
8B6C|1|5|A|3593
8B6C|1|5|A|3594
8B6C|1|5|C|3595
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
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