IL_8B7Y_025

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUCC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_025 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2491

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8B7Y|1|C|C|511
8B7Y|1|C|U|512
8B7Y|1|C|C|513
8B7Y|1|C|C|514
*
8B7Y|1|C|G|537
8B7Y|1|C|G|538
8B7Y|1|C|A|539
8B7Y|1|C|G|540

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S3

Chain F

30S ribosomal protein S4

Chain q

30S ribosomal protein S12