IL_8B7Y_026

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8B7Y|1|C|A|532, 8B7Y|1|C|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_026 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1175

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8B7Y|1|C|G|515
8B7Y|1|C|U|516
8B7Y|1|C|G|517
8B7Y|1|C|C|518
8B7Y|1|C|C|519
8B7Y|1|C|A|520
8B7Y|1|C|G|521
*
8B7Y|1|C|C|528
8B7Y|1|C|G|529
8B7Y|1|C|G|530
8B7Y|1|C|U|531
8B7Y|1|C|A|532
8B7Y|1|C|A|533
8B7Y|1|C|U|534
8B7Y|1|C|A|535
8B7Y|1|C|C|536

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S3

Chain F

30S ribosomal protein S4

Chain q

30S ribosomal protein S12