IL_8B7Y_036

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8B7Y|1|C|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_036 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1133

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8B7Y|1|C|U|684
8B7Y|1|C|G|685
8B7Y|1|C|U|686
8B7Y|1|C|A|687
8B7Y|1|C|G|688
*
8B7Y|1|C|C|699
8B7Y|1|C|G|700
8B7Y|1|C|U|701
8B7Y|1|C|A|702
8B7Y|1|C|G|703
8B7Y|1|C|A|704
8B7Y|1|C|G|705
8B7Y|1|C|A|706

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain p

30S ribosomal protein S11