IL_8B7Y_055
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 8B7Y|1|C|A|1257, 8B7Y|1|C|A|1280, 8B7Y|1|C|C|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8B7Y_055 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.1963
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8B7Y|1|C|G|1255
8B7Y|1|C|A|1256
8B7Y|1|C|A|1257
8B7Y|1|C|G|1258
*
8B7Y|1|C|C|1277
8B7Y|1|C|G|1278
8B7Y|1|C|G|1279
8B7Y|1|C|A|1280
8B7Y|1|C|C|1281
8B7Y|1|C|C|1282
Current chains
- Chain C
- 16S ribosomal RNA
Nearby chains
- Chain E
- 30S ribosomal protein S3
- Chain Q
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S14
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