IL_8B7Y_057

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_057 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1256

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8B7Y|1|C|C|1303
8B7Y|1|C|G|1304
8B7Y|1|C|G|1305
8B7Y|1|C|A|1306
8B7Y|1|C|U|1307
8B7Y|1|C|U|1308
*
8B7Y|1|C|A|1329
8B7Y|1|C|U|1330
8B7Y|1|C|G|1331
8B7Y|1|C|A|1332
8B7Y|1|C|A|1333
8B7Y|1|C|G|1334

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain r

30S ribosomal protein S13