IL_8B7Y_132

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8B7Y|1|I|A|1801, 8B7Y|1|I|C|1816, 8B7Y|1|I|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8B7Y_132 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0603

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8B7Y|1|I|U|1798
8B7Y|1|I|G|1799
8B7Y|1|I|C|1800
8B7Y|1|I|A|1801
8B7Y|1|I|A|1802
8B7Y|1|I|A|1803
8B7Y|1|I|C|1804
*
8B7Y|1|I|G|1813
8B7Y|1|I|G|1814
8B7Y|1|I|A|1815
8B7Y|1|I|C|1816
8B7Y|1|I|G|1817
8B7Y|1|I|U|1818
8B7Y|1|I|A|1819
8B7Y|1|I|U|1820
8B7Y|1|I|A|1821

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2