IL_8BGE_134
3D structure
- PDB id
- 8BGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 8BGE|1|2|A|532, 8BGE|1|2|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BGE_134 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.141
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BGE|1|2|G|515
8BGE|1|2|U|516
8BGE|1|2|G|517
8BGE|1|2|C|518
8BGE|1|2|C|519
8BGE|1|2|A|520
8BGE|1|2|G|521
*
8BGE|1|2|C|528
8BGE|1|2|G|529
8BGE|1|2|G|530
8BGE|1|2|U|531
8BGE|1|2|A|532
8BGE|1|2|A|533
8BGE|1|2|U|534
8BGE|1|2|A|535
8BGE|1|2|C|536
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain 3
- mRNA
- Chain g
- 30S ribosomal protein S3
- Chain h
- 30S ribosomal protein S4
- Chain p
- 30S ribosomal protein S12
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