IL_8BGH_187

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGAUG*CGCG

Length

9 nucleotides

Bulged bases

8BGH|1|0|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BGH_187 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3364

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

8BGH|1|0|C|1030
8BGH|1|0|G|1031
8BGH|1|0|A|1032
8BGH|1|0|U|1033
8BGH|1|0|G|1034
*
8BGH|1|0|C|1121
8BGH|1|0|G|1122
8BGH|1|0|C|1123
8BGH|1|0|G|1124

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 1

5S ribosomal RNA; 5S rRNA

Chain J

50S ribosomal protein L16

Chain e

50S ribosomal protein L36