IL_8BH4_066

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8BH4|1|0|A|1801, 8BH4|1|0|C|1816, 8BH4|1|0|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_066 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1185

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8BH4|1|0|U|1798
8BH4|1|0|G|1799
8BH4|1|0|C|1800
8BH4|1|0|A|1801
8BH4|1|0|A|1802
8BH4|1|0|A|1803
8BH4|1|0|C|1804
*
8BH4|1|0|G|1813
8BH4|1|0|G|1814
8BH4|1|0|A|1815
8BH4|1|0|C|1816
8BH4|1|0|G|1817
8BH4|1|0|U|1818
8BH4|1|0|A|1819
8BH4|1|0|U|1820
8BH4|1|0|A|1821

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2