IL_8BH4_097

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8BH4|1|0|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_097 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1298

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8BH4|1|0|C|2636
8BH4|1|0|U|2637
8BH4|1|0|G|2638
8BH4|1|0|A|2639
8BH4|1|0|G|2640
*
8BH4|1|0|C|2774
8BH4|1|0|G|2775
8BH4|1|0|A|2776
8BH4|1|0|G|2777
8BH4|1|0|A|2778
8BH4|1|0|U|2779
8BH4|1|0|G|2780
8BH4|1|0|A|2781
8BH4|1|0|G|2782

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13