IL_8BH4_170
3D structure
- PDB id
- 8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 8BH4|1|2|A|1257, 8BH4|1|2|A|1280, 8BH4|1|2|C|1281
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BH4_170 not in the Motif Atlas
- Homologous match to IL_5J7L_055
- Geometric discrepancy: 0.2666
- The information below is about IL_5J7L_055
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8BH4|1|2|G|1255
8BH4|1|2|A|1256
8BH4|1|2|A|1257
8BH4|1|2|G|1258
*
8BH4|1|2|C|1277
8BH4|1|2|G|1278
8BH4|1|2|G|1279
8BH4|1|2|A|1280
8BH4|1|2|C|1281
8BH4|1|2|C|1282
Current chains
- Chain 2
- 16S rRNA RRSB-RRNA
Nearby chains
- Chain g
- 30S ribosomal protein S3
- Chain n
- 30S ribosomal protein S10
- Chain r
- 30S ribosomal protein S14
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