IL_8BH4_193

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GAAAC*GUGC

Length

9 nucleotides

Bulged bases

8BH4|1|2|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH4_193 not in the Motif Atlas

Geometric match to IL_8C3A_438

Geometric discrepancy: 0.334

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8BH4|1|2|G|128
8BH4|1|2|A|129
8BH4|1|2|A|130
8BH4|1|2|A|131
8BH4|1|2|C|132
*
8BH4|1|2|G|230
8BH4|1|2|U|231
8BH4|1|2|G|232
8BH4|1|2|C|233

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain t

30S ribosomal protein S16

Chain u

30S ribosomal protein S17

Chain x

30S ribosomal protein S20