IL_8BH6_010

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BH6|1|a|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_010 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1649

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BH6|1|a|G|147
8BH6|1|a|G|148
8BH6|1|a|A|149
8BH6|1|a|U|150
8BH6|1|a|A|151
8BH6|1|a|A|152
8BH6|1|a|C|153
*
8BH6|1|a|G|168
8BH6|1|a|C|169
8BH6|1|a|U|170
8BH6|1|a|A|171
8BH6|1|a|A|172
8BH6|1|a|U|173
8BH6|1|a|A|174
8BH6|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20