IL_8BH6_025

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GU*GUC

Length

5 nucleotides

Bulged bases

8BH6|1|a|U|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_025 not in the Motif Atlas

Geometric match to IL_8VMA_002

Geometric discrepancy: 0.3353

The information below is about IL_8VMA_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

8BH6|1|a|G|612
8BH6|1|a|U|613
*
8BH6|1|a|G|640
8BH6|1|a|U|641
8BH6|1|a|C|642

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17