IL_8BH6_029

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AAGAG*UGGU

Length

9 nucleotides

Bulged bases

8BH6|1|a|A|673

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_029 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.2493

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8BH6|1|a|A|670
8BH6|1|a|A|671
8BH6|1|a|G|672
8BH6|1|a|A|673
8BH6|1|a|G|674
*
8BH6|1|a|U|748
8BH6|1|a|G|749
8BH6|1|a|G|750
8BH6|1|a|U|751

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18