IL_8BH6_060

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH6_060 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.2037

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

8BH6|1|a|A|1427
8BH6|1|a|G|1428
8BH6|1|a|A|1429
8BH6|1|a|G|1430
*
8BH6|1|a|U|1493
8BH6|1|a|G|1494
8BH6|1|a|A|1495
8BH6|1|a|U|1496

Current chains

Chain a

16S ribosomal RNA

Nearby chains