IL_8BH7_008

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8BH7|1|a|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH7_008 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2626

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8BH7|1|a|G|147
8BH7|1|a|G|148
8BH7|1|a|A|149
8BH7|1|a|U|150
8BH7|1|a|A|151
8BH7|1|a|A|152
8BH7|1|a|C|153
*
8BH7|1|a|G|168
8BH7|1|a|C|169
8BH7|1|a|U|170
8BH7|1|a|A|171
8BH7|1|a|A|172
8BH7|1|a|U|173
8BH7|1|a|A|174
8BH7|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20