IL_8BH7_043

3D structure

PDB id

8BH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complex of immature 30S ribosomal subunit with Ribosome maturation factor P (RimP) from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

4.23 Å

Loop

Sequence

AAUC*GAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAUC,GAUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BH7_043 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3993

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_37443.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

8BH7|1|a|A|997
8BH7|1|a|A|998
8BH7|1|a|U|999
8BH7|1|a|C|1000
*
8BH7|1|a|G|1226
8BH7|1|a|A|1227
8BH7|1|a|U|1228
8BH7|1|a|U|1229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z

Chain s

30S ribosomal protein S19