IL_8BHF_009

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

8BHF|1|A2|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_009 not in the Motif Atlas

Geometric match to IL_5J7L_268

Geometric discrepancy: 0.2763

The information below is about IL_5J7L_268

Detailed Annotation

Stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_56987.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

8BHF|1|A2|C|118
8BHF|1|A2|G|119
8BHF|1|A2|A|120
8BHF|1|A2|A|121
*
8BHF|1|A2|U|152
8BHF|1|A2|G|153

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain U1

60S ribosomal protein L35

Chain p3

60S ribosomal protein L7a