IL_8BHF_011
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8BHF|1|A2|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_011 not in the Motif Atlas
- Geometric match to IL_1DQF_001
- Geometric discrepancy: 0.237
- The information below is about IL_1DQF_001
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
8BHF|1|A2|C|125
8BHF|1|A2|C|126
*
8BHF|1|A2|G|142
8BHF|1|A2|C|143
8BHF|1|A2|G|144
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A1
- Ribosomal protein L15
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain K1
- Ribosomal protein L23/L25 N-terminal domain-containing protein
- Chain U1
- 60S ribosomal protein L35
- Chain p3
- 60S ribosomal protein L7a
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