IL_8BHF_017
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 8BHF|1|A2|C|340
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_017 not in the Motif Atlas
- Geometric match to IL_7RQB_073
- Geometric discrepancy: 0.2529
- The information below is about IL_7RQB_073
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_88739.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
8BHF|1|A2|C|339
8BHF|1|A2|C|340
8BHF|1|A2|G|341
8BHF|1|A2|G|342
*
8BHF|1|C2|C|32
8BHF|1|C2|G|33
Current chains
- Chain A2
- 28S ribosomal RNA
- Chain C2
- 5.8S ribosomal RNA
Nearby chains
- Chain W1
- Ribosomal protein L37
- Chain l3
- 60S ribosomal protein L4
- Chain t3
- 60S ribosomal protein L13
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