IL_8BHF_039

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGG*CC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_039 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.2526

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BHF|1|A2|G|742
8BHF|1|A2|C|743
8BHF|1|A2|G|744
8BHF|1|A2|G|745
*
8BHF|1|A2|C|919
8BHF|1|A2|C|920

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

60S ribosomal protein L18a

Chain u3

60S ribosomal protein L14