IL_8BHF_050

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCUG*CGGGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_050 not in the Motif Atlas

Geometric match to IL_1HYS_004

Geometric discrepancy: 0.3926

The information below is about IL_1HYS_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8BHF|1|A2|G|1096
8BHF|1|A2|C|1097
8BHF|1|A2|U|1098
8BHF|1|A2|G|1166
*
8BHF|1|A2|C|1191
8BHF|1|A2|G|1192
8BHF|1|A2|G|1193
8BHF|1|A2|G|1194
8BHF|1|A2|C|1195

Current chains

Chain A2

28S ribosomal RNA

Nearby chains