IL_8BHF_053

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8BHF|1|A2|C|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_053 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2564

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

8BHF|1|A2|G|1358
8BHF|1|A2|G|1359
*
8BHF|1|A2|C|1374
8BHF|1|A2|G|1375
8BHF|1|A2|C|1376
8BHF|1|A2|C|1377

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A1

Ribosomal protein L15

Chain l3

60S ribosomal protein L4

Chain t3

60S ribosomal protein L13