IL_8BHF_055

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_055 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3231

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8BHF|1|A2|G|1425
8BHF|1|A2|G|1426
8BHF|1|A2|A|1427
8BHF|1|A2|U|1428
8BHF|1|A2|C|1429
*
8BHF|1|A2|G|1455
8BHF|1|A2|C|1456
8BHF|1|A2|G|1457
8BHF|1|A2|C|1458
8BHF|1|A2|A|1459
8BHF|1|A2|C|1460

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain D1

Ribosomal protein L18

Chain O1

60S ribosomal protein L29