IL_8BHF_085

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

8BHF|1|A2|C|1935, 8BHF|1|A2|A|2041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_085 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1804

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BHF|1|A2|G|1933
8BHF|1|A2|A|1934
8BHF|1|A2|C|1935
8BHF|1|A2|C|1936
8BHF|1|A2|C|1937
8BHF|1|A2|C|1938
8BHF|1|A2|A|1939
8BHF|1|A2|G|1940
8BHF|1|A2|A|1941
8BHF|1|A2|A|1942
8BHF|1|A2|A|1943
8BHF|1|A2|A|1944
*
8BHF|1|A2|U|2038
8BHF|1|A2|G|2039
8BHF|1|A2|A|2040
8BHF|1|A2|A|2041
8BHF|1|A2|A|2042
8BHF|1|A2|A|2043
8BHF|1|A2|U|2044
8BHF|1|A2|G|2045
8BHF|1|A2|G|2046
8BHF|1|A2|A|2047
8BHF|1|A2|U|2048
8BHF|1|A2|G|2049
8BHF|1|A2|G|2050
8BHF|1|A2|C|2051
8BHF|1|A2|G|2052
8BHF|1|A2|C|2053

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain B2

5S ribosomal RNA; 5S rRNA

Chain S1

60S ribosomal protein L35a

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain k3

Ribosomal protein L3

Chain r3

Ribosomal protein L10