IL_8BHF_093
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8BHF|1|A2|U|2308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_093 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.1285
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
8BHF|1|A2|C|2305
8BHF|1|A2|C|2306
8BHF|1|A2|U|2307
8BHF|1|A2|U|2308
8BHF|1|A2|G|2309
8BHF|1|A2|A|2310
8BHF|1|A2|A|2311
8BHF|1|A2|G|2312
*
8BHF|1|A2|U|2332
8BHF|1|A2|G|2333
8BHF|1|A2|G|2334
8BHF|1|A2|A|2335
8BHF|1|A2|G|2336
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain L1
- Ribosomal protein L26
- Chain R1
- Ribosomal protein L32
- Chain l3
- 60S ribosomal protein L4
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