IL_8BHF_097
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8BHF|1|A2|A|2515, 8BHF|1|A2|A|2516
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_097 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0965
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8BHF|1|A2|C|2449
8BHF|1|A2|U|2450
8BHF|1|A2|G|2451
8BHF|1|A2|A|2452
8BHF|1|A2|G|2453
*
8BHF|1|A2|C|2512
8BHF|1|A2|G|2513
8BHF|1|A2|A|2514
8BHF|1|A2|A|2515
8BHF|1|A2|A|2516
8BHF|1|A2|G|2517
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain C2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T1
- 60S ribosomal protein L34
- Chain W1
- Ribosomal protein L37
- Chain Y1
- 60S ribosomal protein L39-like
- Chain j3
- 60S ribosomal protein L8
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