IL_8BHF_106

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

8BHF|1|A2|G|2655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_106 not in the Motif Atlas

Geometric match to IL_3NDB_004

Geometric discrepancy: 0.3876

The information below is about IL_3NDB_004

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8BHF|1|A2|C|2654
8BHF|1|A2|G|2655
8BHF|1|A2|C|2656
*
8BHF|1|A2|G|2684
8BHF|1|A2|G|2685

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain T1

60S ribosomal protein L34

Chain c1

60S ribosomal protein L37a