IL_8BHF_112

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

8BHF|1|A2|G|3834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_112 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.0997

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|A|2853
8BHF|1|A2|G|2854
8BHF|1|A2|U|2855
8BHF|1|A2|C|2856
8BHF|1|A2|G|2857
8BHF|1|A2|G|2858
*
8BHF|1|A2|C|3832
8BHF|1|A2|U|3833
8BHF|1|A2|G|3834
8BHF|1|A2|U|3835

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain I1

60S ribosomal protein L23

Chain k3

Ribosomal protein L3