IL_8BHF_113

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8BHF|1|A2|U|2883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_113 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0966

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8BHF|1|A2|C|2870
8BHF|1|A2|G|2871
8BHF|1|A2|U|2872
8BHF|1|A2|A|2873
8BHF|1|A2|A|2874
8BHF|1|A2|C|2875
*
8BHF|1|A2|G|2880
8BHF|1|A2|G|2881
8BHF|1|A2|A|2882
8BHF|1|A2|U|2883
8BHF|1|A2|A|2884
8BHF|1|A2|A|2885
8BHF|1|A2|G|2886

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain a1

60S ribosomal protein L41

Chain c1

60S ribosomal protein L37a