IL_8BHF_122

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_122 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1372

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BHF|1|A2|U|3710
8BHF|1|A2|C|3711
8BHF|1|A2|A|3712
8BHF|1|A2|A|3713
8BHF|1|A2|A|3714
8BHF|1|A2|G|3715
8BHF|1|A2|U|3716
*
8BHF|1|A2|A|3727
8BHF|1|A2|A|3728
8BHF|1|A2|U|3729
8BHF|1|A2|G|3730
8BHF|1|A2|A|3731
8BHF|1|A2|A|3732
8BHF|1|A2|G|3733

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain V1

60S ribosomal protein L36

Chain b1

Ribosomal protein L36a like

Chain j3

60S ribosomal protein L8