IL_8BHF_124

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8BHF|1|A2|A|3780, 8BHF|1|A2|C|3786, 8BHF|1|A2|C|3805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_124 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.0833

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BHF|1|A2|C|3776
8BHF|1|A2|C|3777
8BHF|1|A2|A|3778
8BHF|1|A2|A|3779
8BHF|1|A2|A|3780
8BHF|1|A2|U|3781
8BHF|1|A2|G|3782
8BHF|1|A2|C|3783
8BHF|1|A2|C|3784
8BHF|1|A2|U|3785
8BHF|1|A2|C|3786
8BHF|1|A2|G|3787
*
8BHF|1|A2|C|3803
8BHF|1|A2|G|3804
8BHF|1|A2|C|3805
8BHF|1|A2|G|3806

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

Small subunit ribosomal RNA; SSU rRNA

Chain a1

60S ribosomal protein L41