IL_8BHF_132

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGUAGAAUAAGU*ACUAC

Length

19 nucleotides

Bulged bases

8BHF|1|A2|U|3952, 8BHF|1|A2|G|3953, 8BHF|1|A2|A|3957, 8BHF|1|A2|U|3959

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_132 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3963

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8BHF|1|A2|G|3950
8BHF|1|A2|G|3951
8BHF|1|A2|U|3952
8BHF|1|A2|G|3953
8BHF|1|A2|U|3954
8BHF|1|A2|A|3955
8BHF|1|A2|G|3956
8BHF|1|A2|A|3957
8BHF|1|A2|A|3958
8BHF|1|A2|U|3959
8BHF|1|A2|A|3960
8BHF|1|A2|A|3961
8BHF|1|A2|G|3962
8BHF|1|A2|U|3963
*
8BHF|1|A2|A|4047
8BHF|1|A2|C|4048
8BHF|1|A2|U|4049
8BHF|1|A2|A|4050
8BHF|1|A2|C|4051

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain l1

60S ribosomal protein L10a