IL_8BHF_146

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8BHF|1|A2|U|4423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_146 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0847

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8BHF|1|A2|G|4391
8BHF|1|A2|U|4392
8BHF|1|A2|G|4393
*
8BHF|1|A2|U|4421
8BHF|1|A2|U|4422
8BHF|1|A2|U|4423
8BHF|1|A2|U|4424
8BHF|1|A2|U|4425

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain k3

Ribosomal protein L3

Chain r3

Ribosomal protein L10