IL_8BHF_149

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8BHF|1|A2|G|4508, 8BHF|1|A2|A|4509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_149 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.0817

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8BHF|1|A2|C|4442
8BHF|1|A2|U|4443
8BHF|1|A2|C|4444
*
8BHF|1|A2|G|4506
8BHF|1|A2|U|4507
8BHF|1|A2|G|4508
8BHF|1|A2|A|4509
8BHF|1|A2|G|4510

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain 11

nascent chain

Chain I1

60S ribosomal protein L23

Chain k3

Ribosomal protein L3