IL_8BHF_159

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACAUUU*ACCAU

Length

11 nucleotides

Bulged bases

8BHF|1|A2|C|4656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_159 not in the Motif Atlas

Homologous match to IL_8GLP_317

Geometric discrepancy: 0.2765

The information below is about IL_8GLP_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8BHF|1|A2|A|4610
8BHF|1|A2|C|4611
8BHF|1|A2|A|4612
8BHF|1|A2|U|4613
8BHF|1|A2|U|4614
8BHF|1|A2|U|4615
*
8BHF|1|A2|A|4655
8BHF|1|A2|C|4656
8BHF|1|A2|C|4657
8BHF|1|A2|A|4658
8BHF|1|A2|U|4659

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain I1

60S ribosomal protein L23

Chain J1

TRASH domain-containing protein

Chain k3

Ribosomal protein L3