IL_8BHF_160

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

8BHF|1|A2|U|4620, 8BHF|1|A2|U|4622

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_160 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2599

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8BHF|1|A2|U|4618
8BHF|1|A2|G|4619
8BHF|1|A2|U|4620
8BHF|1|A2|A|4621
8BHF|1|A2|U|4622
8BHF|1|A2|G|4623
*
8BHF|1|A2|C|4648
8BHF|1|A2|G|4649
8BHF|1|A2|A|4650
8BHF|1|A2|A|4651
8BHF|1|A2|G|4652

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain J1

TRASH domain-containing protein

Chain Q1

60S ribosomal protein L31

Chain k3

Ribosomal protein L3