IL_8BHF_163

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

8BHF|1|A2|A|4694

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_163 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2375

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8BHF|1|A2|G|4666
8BHF|1|A2|A|4667
8BHF|1|A2|U|4668
8BHF|1|A2|U|4669
8BHF|1|A2|A|4670
8BHF|1|A2|U|4671
*
8BHF|1|A2|A|4691
8BHF|1|A2|G|4692
8BHF|1|A2|A|4693
8BHF|1|A2|A|4694
8BHF|1|A2|U|4695
8BHF|1|A2|C|4696

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain B1

60S ribosomal protein L13a

Chain Z1

Ubiquitin-60S ribosomal protein L40

Chain q3

60S ribosomal protein L9