IL_8BHF_170

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGC*GCCC

Length

7 nucleotides

Bulged bases

8BHF|1|A2|C|4903

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_170 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3873

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8BHF|1|A2|G|4880
8BHF|1|A2|G|4881
8BHF|1|A2|C|4884
*
8BHF|1|A2|G|4901
8BHF|1|A2|C|4902
8BHF|1|A2|C|4903
8BHF|1|A2|C|4904

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain u3

60S ribosomal protein L14