IL_8BHF_177

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_177 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1969

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8BHF|1|A2|A|4996
8BHF|1|A2|G|4997
8BHF|1|A2|A|4998
8BHF|1|A2|G|4999
*
8BHF|1|A2|C|5014
8BHF|1|A2|G|5015
8BHF|1|A2|A|5016
8BHF|1|A2|U|5017

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain E1

Ribosomal protein L19

Chain J3

40S ribosomal protein S8