IL_8BHF_178

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_178 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.1751

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8BHF|1|A3|G|23
8BHF|1|A3|C|24
8BHF|1|A3|A|25
*
8BHF|1|A3|U|649
8BHF|1|A3|A|650
8BHF|1|A3|U|651

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain K3

Ribosomal protein S9 (Predicted)

Chain Y3

Ribosomal protein S23