IL_8BHF_190
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8BHF|1|A3|U|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_190 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.133
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8BHF|1|A3|G|145
8BHF|1|A3|G|146
8BHF|1|A3|A|147
8BHF|1|A3|U|148
8BHF|1|A3|A|149
8BHF|1|A3|A|150
8BHF|1|A3|C|151
*
8BHF|1|A3|G|167
8BHF|1|A3|C|168
8BHF|1|A3|U|169
8BHF|1|A3|A|170
8BHF|1|A3|A|171
8BHF|1|A3|U|172
8BHF|1|A3|A|173
8BHF|1|A3|C|174
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain H3
- 40S ribosomal protein S6
- Chain J1
- TRASH domain-containing protein
- Chain Z3
- 40S ribosomal protein S24
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