IL_8BHF_198

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_198 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.3339

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

8BHF|1|A3|C|317
8BHF|1|A3|A|318
8BHF|1|A3|C|319
8BHF|1|A3|G|320
*
8BHF|1|A3|C|331
8BHF|1|A3|G|332
8BHF|1|A3|G|333

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain H3

40S ribosomal protein S6

Chain J1

TRASH domain-containing protein