IL_8BHF_201

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8BHF|1|A3|U|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_201 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1112

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8BHF|1|A3|G|411
8BHF|1|A3|G|412
8BHF|1|A3|G|413
*
8BHF|1|A3|C|424
8BHF|1|A3|G|425
8BHF|1|A3|A|426
8BHF|1|A3|U|427
8BHF|1|A3|U|428
8BHF|1|A3|C|429

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain F3

40S ribosomal protein S4

Chain K3

Ribosomal protein S9 (Predicted)

Chain Y3

Ribosomal protein S23