IL_8BHF_213

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_213 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1169

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8BHF|1|A3|C|663
8BHF|1|A3|A|664
8BHF|1|A3|G|665
*
8BHF|1|A3|C|1162
8BHF|1|A3|C|1163
8BHF|1|A3|G|1164

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S2

Chain Y3

Ribosomal protein S23