IL_8BHF_219

3D structure

PDB id

8BHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8BHF_219 not in the Motif Atlas

Homologous match to IL_4V88_423

Geometric discrepancy: 0.1258

The information below is about IL_4V88_423

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

8BHF|1|A3|A|802
8BHF|1|A3|C|803
*
8BHF|1|A3|G|860
8BHF|1|A3|A|861
8BHF|1|A3|A|862
8BHF|1|A3|U|863

Current chains

Chain A3

18S ribosomal RNA

Nearby chains

Chain I3

40S ribosomal protein S7

Chain M3

40S ribosomal protein S11

Chain X3

Ribosomal protein S15a

Chain Y3

Ribosomal protein S23