IL_8BHF_221
3D structure
- PDB id
- 8BHF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stalled rabbit 80S ribosomes in complex with human CCR4-NOT and CNOT4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8BHF_221 not in the Motif Atlas
- Geometric match to IL_4V88_425
- Geometric discrepancy: 0.2313
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8BHF|1|A3|G|807
8BHF|1|A3|A|808
8BHF|1|A3|A|809
8BHF|1|A3|A|810
8BHF|1|A3|A|811
8BHF|1|A3|A|812
8BHF|1|A3|A|813
8BHF|1|A3|U|814
8BHF|1|A3|U|815
*
8BHF|1|A3|A|849
8BHF|1|A3|C|850
8BHF|1|A3|C|851
8BHF|1|A3|G|852
8BHF|1|A3|C|853
8BHF|1|A3|A|854
8BHF|1|A3|G|855
8BHF|1|A3|C|856
Current chains
- Chain A3
- 18S ribosomal RNA
Nearby chains
- Chain F3
- 40S ribosomal protein S4
- Chain K3
- Ribosomal protein S9 (Predicted)
- Chain M3
- 40S ribosomal protein S11
- Chain X3
- Ribosomal protein S15a
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